PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_14180V3.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YC
Protein Properties Length: 192aa    MW: 22003.4 Da    PI: 5.2792
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_14180V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC167.41.8e-52131171102
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql +fw++q   +e+++d k h+lPlarikki+k+dedvkmi++eaPvl+skace+fileltlrsw+h+eenkrrtl+++dia a+tr di
  Pp3c13_14180V3.2.p  13 QLAQFWAQQtqeMEEVNDSKTHQLPLARIKKIMKSDEDVKMIATEAPVLFSKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGDI 103
                         7899**999889******************************************************************************* PP

               NF-YC  89 fdflvdivprdelk 102
                         fdflvdivprdelk
  Pp3c13_14180V3.2.p 104 FDFLVDIVPRDELK 117
                         ***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-3011107IPR009072Histone-fold
PfamPF008083.0E-213598IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.0E-3636113IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNMLHYQQIQ KQQLAQFWAQ QTQEMEEVND SKTHQLPLAR IKKIMKSDED VKMIATEAPV  60
LFSKACEMFI LELTLRSWIH TEENKRRTLQ RNDIAGAITR GDIFDFLVDI VPRDELKEED  120
LGVPWSGVPA DGVQYGGMYY PPMPGQPIHP MRAPRMMVGQ PAVPPNPQMM YQSPLAVLAP  180
EQQQQPQQQL Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-42711312119HapE
4g92_C1e-42711312119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18591RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.25191e-143gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346078.12e-65PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008346079.12e-65PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356118.12e-65PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356119.12e-65PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008372003.12e-65PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9SMP05e-65NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA9NUT04e-68A9NUT0_PICSI; Putative uncharacterized protein
STRINGPP1S158_8V6.11e-137(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-56nuclear factor Y, subunit C2